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| Bioinformatics and computational biology involve the use of techniques from applied mathematics, informatics, statistics, and computer science to solve biological problems. Research in computational biology often overlaps with systems biology. Major research efforts in the field include sequence alignment, gene finding, genome assembly, protein structure alignment, protein structure prediction, prediction of gene expression and protein-protein interactions, and the modeling of evolution.o Read more
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| Fast and accurate long-read alignment with Burrows–Wheeler transform Heng Li, Richard Durbi |
| Speeding up whole-genome alignment by indexing frequency vectors Tamer Kahveci, Vebjorn Ljosa, Ambuj K. Singh |
| Survey on index based homology search algorithm Xianyang Jiang, Peiheng Zhang, Xinchun Liu, Stephen S.-T. Yau |
| A Database Index to Large Biological Sequences Ela Hunt , Malcolm P. Atkinson , Robert W. Irving |
| An algorithm for searching sequence databases in time proportional to the logarithm of the database size Eldar Giladi , Michael G. Walker , James Ze Wang , Wayne Volkmuth |
| Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases Ozgur Ozturk , Hakan Ferhatosmanoglu |
| Error Tolerant Indexing and Alignment of Short Reads with Covering Template Families Giladi E, Healy J, Myers G, Hart C, Kapranov P, Lipson D, Roels S, Thayer E, Letovsky S. |
| Indexing and Retrieval for Genomic Databases Hugh E. Williams, Justin Zobel |
| Pattern Matching in Computational Biology Guy Blelloch |
| Rapid similarity searches of nucleic acid and protein data banks John Wilbur, David Lipman |
| SST: an algorithm for finding near-exact sequence matches in time proportional to the logarithm of the database size Eldar Giladi, Michael Walker, James Wang, Wayne Volkmuth |
| The ed-tree: an index for large DNA sequence databases Zhenqiang Tan, Xia Cao, Beng Chin Ooi, Anthony K. H. Tun |
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