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Bayes Net Toolbox for Matlab   - This is the project page for a new open-source release of Kevin Murphy
Method home for gp-map-1   - Gaussian processes for regression trained with a maximum-aposteriori approach implemented with conjugate gradient optimization.
OpenPNL   - Open Source Probabilistic Networks Library is a tool for working with graphical models (created by Intel).
UCINET   - a software package for the analysis of social network data.