English»Software»Natural Language Processing & Information Extraction»Parsing & Tagging»Named Entity Recognizers (NER)»BIO-specific | searchivarius.org
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AbGene System   - a protein tagger.
ABNER - a bio-medical NER  
GENIA   - (POS) part-of-speech tagging, shallow parsing, and named entity recognition for biomedical text
KEX   - a protein name annotation tool based on PROPER (PROtien Proper-noun Extraction Rules).
MetaMap   - a highly configurable program developed by Dr. Alan (Lan) Aronson at the National Library of Medicine (NLM) to map biomedical text to the UMLS Metathesaurus.
Python wrapper around MetaMap