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| AbGene System - a protein tagger.
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| ABNER - a bio-medical NER |
| GENIA - (POS) part-of-speech tagging, shallow parsing, and named entity recognition for biomedical text
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| KEX - a protein name annotation tool based on PROPER (PROtien Proper-noun Extraction Rules).
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| MetaMap - a highly configurable program developed by Dr. Alan (Lan) Aronson at the National Library of Medicine (NLM) to map biomedical text to the UMLS Metathesaurus.
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| Python wrapper around MetaMap |
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